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PHMG & Associates

Accounting & Bookkeeping

Payroll, PF and ESI Services – Processing and Compliance

We run payroll end to end: monthly salary processing, tax deducted at source on salary, provident fund and ESI returns, state professional tax where it applies, Form 16 at the year end, and full and final settlements when people leave.

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What is Payroll, PF & ESI Services?

Payroll processing is the monthly cycle of computing salaries and deductions, paying employees, depositing the statutory dues withheld, and filing the returns that report them. In India it brings together income tax withholding on salary, provident fund, employees' state insurance, state professional tax and the records employment law requires.

Who needs it

  • Employers with provident fund or ESI registration, which brings monthly returns and deposits.
  • Businesses crossing the headcount at which provident fund or ESI registration becomes required.
  • Companies with employees across states, where professional tax and labour registrations differ by state.
  • Employers who need salary tax withheld correctly across the two tax regimes employees can choose between.
  • Businesses whose payroll is still run on spreadsheets, where a single error repeats every month.
  • Employers with contractors and consultants alongside employees, where the withholding treatment differs.
  • Companies that need Form 16 and full and final settlements issued on time and correctly computed.

Benefits

  • Salaries processed to a fixed monthly calendar, with payslips and a register management can check.
  • Tax on salary computed on each employee's chosen regime and declarations, and revised through the year.
  • Provident fund and ESI deposits and returns filed by their due dates each month.
  • Professional tax handled state by state, including states where none applies.
  • Form 16 issued from the filed returns within the time allowed.
  • Full and final settlements computed with notice, leave encashment, gratuity where due, and the final tax position.
  • A single record for audit, assessment and any inspection by the authorities.

Key facts

ItemPosition
Provident fundDeposit and electronic challan-cum-return by the 15th of the following month
ESIContribution by the 15th of the following month
Salary TDS depositBy the 7th of the following month; for March, by 30 April
Salary TDS returnForm 24Q, quarterly: 31 July, 31 October, 31 January, 31 May
Form 16By 15 June following the financial year, generated from the filed returns
Professional taxA state levy: Maharashtra and Punjab levy it, Uttar Pradesh does not
GratuityOn completion of the qualifying period of continuous service, as the Payment of Gratuity Act provides
Labour codesIn force from November 2025, with central rules notified in 2026 and state rules varying

What does the monthly payroll cycle look like?

Payroll is a calendar before it is a calculation. The statutory dates are fixed, so the internal cut-offs have to be set backwards from them.

  • Cut-off: attendance, leave, joiners, leavers and salary changes are frozen for the month
  • Processing: gross pay, statutory deductions and tax on salary computed for each employee
  • Review: the employer checks the register and the variance against the previous month before any payment
  • Payment: the bank file is generated from the approved register and payslips are released
  • Deposits: tax deducted by the 7th; provident fund and ESI by the 15th; professional tax as the state requires
  • Returns: provident fund and ESI returns monthly, Form 24Q quarterly
  • Year end: declarations verified against proofs, final tax adjusted, and Form 16 issued by 15 June

Which statutory deductions apply?

Four may apply, and only two of them are national: provident fund and ESI depend on the establishment being covered and the employee being within the wage conditions, tax on salary applies to anyone whose estimated annual income is taxable, and professional tax applies only in states that levy it.

DeductionWho it applies toWhen it is paid
Provident fundEstablishments covered by the Employees' Provident Funds Act, for members within the wage conditionsBy the 15th of the following month, with the ECR
ESIEstablishments covered by the ESI Act, for employees within the wage ceilingBy the 15th of the following month
Tax deducted on salaryEvery employee whose estimated annual income is taxableBy the 7th of the following month
Professional taxOnly in states that levy it, at that state's ratesAs the state law prescribes
Labour welfare fundOnly in states that levy it, where the establishment is coveredAt the frequency the state prescribes

The wage ceilings, contribution rates and coverage thresholds for provident fund and ESI are set by their own statutes and have been revised from time to time, and the statutory definition of wages has itself changed under the labour codes. The current figures should be confirmed for the period being processed rather than carried forward from an earlier year.

How does professional tax differ by state?

This catches employers with people in more than one state, because the answer is genuinely different in each. There is no national professional tax and no national rate.

StatePosition
Uttar PradeshNo professional tax on salaried employees or professionals; no registration or filing
MaharashtraLevied on a slab basis, with monthly deduction and an annual ceiling, with separate slabs that have applied to men and women
PunjabLevied as the Punjab State Development Tax: a flat monthly amount on persons liable to income tax whose income exceeds the threshold in the state Act
Other statesVaries: some levy it, some do not; rates, slabs and return frequency are set by each state

For a firm with offices in Noida, Delhi, Ludhiana and Meerut, that means professional tax arises in Ludhiana and not in Noida, Delhi or Meerut. The practical risk runs both ways: missing a registration in a state that levies it, and registering and filing in a state that does not.

Why salary structure affects more than take-home pay

How a salary is split between its components decides the cost of employing someone, not just what reaches their account. Provident fund and gratuity are computed on defined wage elements, so moving pay between basic salary and allowances changes the employer's statutory cost. The labour codes introduced a statutory definition of wages that limits how far the excluded components can be used, with the effect that structures built to minimise provident fund and gratuity may no longer achieve it.

The practical consequence is that a structure designed some years ago should be reviewed against the current definition rather than assumed to still work, and that the review is better done deliberately than discovered during an inspection or at a settlement when gratuity is computed.

Example: a leaver's full and final settlement

The figures below are illustrative. An employee on a monthly gross of ₹80,000 resigns on 12 November having served part of the notice period, with 9 days of unused leave and 6 years of continuous service. The settlement computes salary for the days worked in November, encashment of the 9 days under the company's policy, recovery for the portion of notice not served, and gratuity, which is payable because the qualifying period of continuous service has been completed and is computed on the formula and the wage elements the Payment of Gratuity Act prescribes. Reimbursement claims outstanding are added and any advance is recovered. The tax for the year is then recomputed, because the monthly deductions assumed twelve months of salary and only part of the year was worked, which commonly produces a refund position that the employee claims in their return rather than from the employer.

A note on the Income-tax Act, 2025

The Income-tax Act, 2025 replaced the Income-tax Act, 1961 with effect from 1 April 2026. It uses the term "tax year" in place of previous year and assessment year, and it renumbers sections and forms. This page uses the 1961 section numbers because that is how the provisions are still commonly known; the corresponding provisions of the Income-tax Act, 2025 apply to periods governed by the new Act. Confirm the current numbering for your period before relying on a reference.

Official sources

Documents required

  1. 01Employee master data: name, date of joining, designation, permanent account number and Aadhaar
  2. 02Salary structure for each employee, with the breakdown of the components
  3. 03Attendance and leave records for the month, and any overtime
  4. 04Bank details for salary payment, and the universal account number for provident fund members
  5. 05Tax regime choice and investment and exemption declarations from each employee, with proofs
  6. 06Provident fund and ESI registration details and portal credentials
  7. 07Professional tax registration details for each state where it applies
  8. 08Previous employer salary and tax details for employees who joined during the year
  9. 09Resignation, notice and settlement details for leavers

Due dates and penalties

ItemDue dateIf missed
Provident fund deposit and electronic challan-cum-returnBy the 15th of the following monthInterest on the delayed amount and damages at the rates prescribed
ESI contributionBy the 15th of the following monthInterest on the delayed amount and damages at the rates prescribed
Tax deducted on salaryBy the 7th of the following month; for March, by 30 AprilInterest under Section 201(1A) for the period of delay
Quarterly return in Form 24Q31 July, 31 October, 31 January and 31 MayLate fee of ₹200 per day under Section 234E, limited to the tax deducted
Form 16 to employeesBy 15 June following the end of the financial yearPenalty for failure to furnish the certificate
Professional taxAs each state's law prescribes, where the state levies itInterest and penalty under the state legislation

Provident fund and ESI dates are monthly and do not move with the payroll date, so a late salary run does not postpone them. Professional tax is a state levy and its dates, rates and even its existence differ by state. The four labour codes were brought into force in November 2025 with central rules notified during 2026, and state rules were still being notified in parts, so the position for a particular establishment should be confirmed for its state.

Mistakes to avoid

  • Depositing provident fund or ESI late because the salary run slipped, when the statutory date does not move with it.
  • Deducting tax on salary without collecting each employee's regime choice and declarations, and then having to correct it in March.
  • Not accounting for an employee's previous employer salary, which understates tax for most of the year.
  • Registering for professional tax in a state that does not levy it, or missing it in a state that does.
  • Treating a consultant as outside payroll without testing whether the engagement is in substance employment.
  • Issuing Form 16 prepared by hand rather than generated from the filed quarterly return.
  • Settling a leaver's dues without computing gratuity where the qualifying service is met, or without the final tax position.
  • Keeping salary structures unchanged for years while the statutory wage definitions around them change.

Why PHMG

  • Partner-led: a chartered accountant reviews your work, not only a junior team.
  • Clear fee and scope in writing before we start.
  • Deadlines tracked for you, with reminders well before the due date.
  • Your documents and data are handled confidentially.
  • Online service across India, with a single point of contact.

Fees depend on your case. Request a quote for a clear scope and fee.

How we handle your payroll, pf & esi services

Step 01

Inputs

We collect attendance, leave, new joiners, leavers and any changes to salary for the month.

By the agreed cut-off

Step 02

Processing

We compute gross pay, statutory deductions and tax on salary for each employee, and prepare the register.

2–3 days

Step 03

Review and approval

You review the register and the variance against last month before anything is paid.

1 day

Step 04

Payment and payslips

The bank file is generated for salary payment and payslips are released to employees.

On the pay date

Step 05

Statutory deposits

We deposit tax deducted, provident fund and ESI, and the professional tax where it applies.

By each due date

Step 06

Returns and certificates

We file the provident fund and ESI returns monthly, Form 24Q quarterly, and issue Form 16 at the year end.

Monthly, quarterly, annual

Frequently asked questions

Quick answers to the questions we hear most often.

Still have a question?

A chartered accountant will look at your case and reply within one business day.

Ask a CA
What are the PF and ESI due dates?

Both the provident fund deposit with its electronic challan-cum-return, and the ESI contribution, are due by the 15th of the month following the month to which they relate. These dates are fixed by the respective statutes and do not shift because a salary run was late. Delay attracts interest on the amount and damages at the rates prescribed, which are levied separately from the contribution itself.

Which states levy professional tax?

Professional tax is a state levy, so it varies. Maharashtra levies it on a slab basis with an annual ceiling, reached through monthly deductions with a higher amount in one month of the year. Punjab levies it as the Punjab State Development Tax, a flat monthly amount applying to persons liable to income tax whose income exceeds the threshold the state Act sets. Uttar Pradesh does not levy professional tax at all, so establishments in Noida, Meerut and elsewhere in the state handle provident fund, ESI and tax withholding but have no professional tax registration or filing. The rates and thresholds should be confirmed for the state concerned.

How is tax on salary computed through the year?

The employer estimates each employee's income for the full year, applies the regime the employee has chosen and the exemptions and deductions declared, works out the annual tax, and deducts it in roughly equal monthly instalments. Because it is an estimate, it is revised whenever something changes: a salary revision, a bonus, a declaration that was not supported by proof, or income from a previous employer. The final adjustment is made in the last quarter, which is why February and March deductions are often larger.

When must Form 16 be issued?

By 15 June following the end of the financial year. Form 16 is generated from the quarterly returns already filed, on the TRACES portal, rather than prepared independently, so Part A in particular reflects what the filed returns show. This is why a quarterly return that was not filed, or was filed with errors, blocks the issue of correct certificates and has to be corrected first.

What goes into a full and final settlement?

The salary for the days worked in the final month, leave encashment as the company's policy and the applicable law provide, notice pay recovered or paid depending on the notice served, reimbursement claims outstanding, and gratuity where the employee has completed the qualifying period of continuous service. Against that sit any recoveries, such as advances or company property not returned. The tax position for the year is recomputed on the final figures, because the earlier monthly deductions were based on a full year of employment that did not happen.

What is the status of the labour codes?

The four labour codes, covering wages, industrial relations, social security and occupational safety, were brought into force in November 2025, replacing a large number of earlier central labour enactments, and central rules under them were notified during 2026. Enforcement depends in part on state rules, and these were still being notified in several states, so what applies to a particular establishment turns on its state and its activity. The change that matters most for payroll is the statutory definition of wages, which affects how provident fund and gratuity are computed and can require salary structures to be revisited. We confirm the position for each establishment rather than applying a single national answer.

Can payroll be outsourced while we keep control of the data?

Yes, and that is the usual arrangement. The employer approves the payroll register before any payment is made, and the salary payment is executed from the employer's own bank account using the file generated from the approved register. Our role is processing, deposits, returns and certificates. Access to employee data is restricted to the people working on the engagement, and the salary register remains the employer's record.

Do consultants and contractors go through payroll?

Not through payroll, but the withholding treatment still has to be right. A genuine consultant is paid against an invoice with tax deducted under the provisions for professional or contractual payments, and is reported in Form 26Q rather than Form 24Q, with no provident fund or ESI. The question that matters is whether the engagement is in substance employment, looking at control over the work, hours, exclusivity and how the person is treated in practice. Labelling an employee a consultant does not change the obligations if the substance is employment.

Last reviewed: October 2026

This content is for general information and does not constitute professional advice. Laws, rates and due dates change; please confirm the current position for your case before acting.

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