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PHMG & Associates

GST & Indirect Tax

GST Refund and LUT – Claims, Time Limits and Process

We prepare and file GST refund claims, furnish the Letter of Undertaking that lets you export without paying IGST, and deal with deficiency memos and show-cause notices on refund applications. This page sets out the situations in which a refund arises, the forms involved and the time limits.

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What is GST Refund & LUT?

A GST refund is a claim for tax or input tax credit that a taxpayer is entitled to recover, most commonly on exports, supplies to special economic zones, an inverted duty structure where inputs are taxed higher than outputs, or an excess balance in the electronic cash ledger. Claims are filed in Form RFD-01 on the GST portal.

Who needs it

  • Exporters of goods or services, whether they export on payment of IGST or under a Letter of Undertaking without paying it.
  • Suppliers to special economic zone units and developers, whose supplies are zero-rated.
  • Businesses with an inverted duty structure, where the tax on inputs is higher than the tax on the finished supply.
  • Taxpayers carrying an excess balance in the electronic cash ledger after their liability is paid.
  • Suppliers of deemed exports, and the recipients of such supplies where the claim lies with them.
  • Taxpayers who have paid tax twice, paid under the wrong head, or paid on a supply that was never made.
  • Taxpayers who have become entitled to a refund because an appeal or an assessment was decided in their favour.

Benefits

  • The correct refund route identified, since exports with IGST and exports under LUT follow different procedures.
  • A claim supported by the statements and reconciliations the rules require, which is where most claims fail.
  • A Letter of Undertaking furnished on time so exports can be made without blocking working capital in IGST.
  • Replies to deficiency memos and show-cause notices, and re-filing within the time still available.
  • Tracking of the claim through acknowledgement, provisional refund and the final order.

Key facts

ItemPosition
Main application formForm RFD-01, filed on the GST portal
Letter of UndertakingForm RFD-11, furnished for each financial year
Time limitTwo years from the relevant date for the refund category
Acknowledgement / deficiency memoForm RFD-02 / Form RFD-03
Sanction order and payment adviceForm RFD-06 and Form RFD-05
Provisional refundAvailable for zero-rated supplies, for the major part of the claim
Interest on delayPayable if the refund is not issued within 60 days of a complete application
AuthorityThe proper officer of the jurisdictional Central or State tax authority

When does a GST refund arise?

A refund arises in a defined list of situations rather than whenever a taxpayer feels out of pocket, and the category chosen governs the documents, the formula and the relevant date. The common categories are below.

SituationWhat is refundedMain support needed
Export of goods on payment of IGSTThe IGST paid on the exportShipping bill and matching return data
Export of goods or services under a LUTAccumulated input tax creditLUT, invoices, and proof of receipt of foreign exchange for services
Supplies to a SEZ unit or developerIGST paid, or accumulated creditEndorsement by the specified officer
Inverted duty structureAccumulated credit, per the prescribed formulaRate-wise working of inputs and outputs
Deemed exportsTax paid on the supplyDocuments prescribed for deemed export claims
Excess balance in the electronic cash ledgerThe unused cash balanceLedger balance on the portal
Tax paid in error or twiceThe excess tax paidPayment challans and a reconciliation
Refund following an appeal or assessmentThe amount the order allowsThe order giving rise to the refund

How long does a GST refund take?

A complete application is acknowledged within the period the rules prescribe, and for zero-rated supplies the officer may grant a provisional refund of the major part of the claim soon after, with the balance following scrutiny. The timetable only holds, though, if the application is complete when filed.

The single biggest cause of delay is the deficiency memo. Because a memo means the application is treated as never having been made, a defect found in week three does not cost three weeks: it sends the claim back to the start, with the two-year limit still running in the background. Where a refund is not paid within 60 days of a complete application, interest becomes payable to the taxpayer at the rate the Act prescribes.

How is an inverted duty structure refund computed?

The refund is not simply the credit left in the ledger. The rules prescribe a formula that compares turnover of the inverted-rated supply with total turnover, applies that proportion to the credit on inputs, and then reduces the result by the output tax payable on that supply. The figures below illustrate the shape of the calculation only.

StepIllustrative amount
Turnover of the inverted-rated supply in the period₹80,00,000
Total turnover in the period₹1,00,00,000
Net input tax credit on inputs for the period₹9,00,000
Credit attributable to the inverted-rated supply (80% of ₹9,00,000)₹7,20,000
Less: output tax payable on the inverted-rated supply(₹4,00,000)
Maximum refund of accumulated credit₹3,20,000

Two points cause most of the disputes in this category. The formula works on credit on inputs, so credit relating to input services and capital goods does not enter the refundable amount even though it sits in the same ledger. And the computation is period-based, so a claim cannot be improved by selecting months after the event.

Exporting under a LUT: what to get right

The Letter of Undertaking is furnished in Form RFD-11 for each financial year, and its practical effect is that working capital is not parked in IGST that has to be reclaimed. The conditions are straightforward but unforgiving on timing.

  • Furnish the LUT for the financial year before making any export without payment of IGST, not after
  • Keep the acknowledged LUT on file: banks and customs agents ask for it
  • Mention on export invoices that the supply is made under a LUT without payment of IGST
  • Report zero-rated supplies correctly in GSTR-1 and GSTR-3B so the refund data reconciles later
  • For export of services, keep the foreign inward remittance or bank realisation certificates: receipt of foreign exchange is what evidences the export
  • Watch the period within which export proceeds must be realised, because a failure to realise can affect the zero-rated treatment

Why claims get rejected, and what prevents it

Most rejections are not about entitlement. They are about the claim not matching the records the department can see.

  • Invoice, shipping bill and return data that do not agree, so the claim cannot be traced to the returns
  • Credit claimed that was not reported in the returns for the refund period
  • The wrong refund category, which brings the wrong statement format and the wrong relevant date
  • An inverted duty claim computed on total credit instead of the prescribed formula
  • No evidence of receipt of foreign exchange for an export of services
  • A bank account not validated on the portal, or not in the registered person's name
  • A fresh application filed after a deficiency memo without the defect having been cured

Official sources

Documents required

  1. 01GST returns for the refund period: GSTR-1, GSTR-3B and the GSTR-2B data
  2. 02Export invoices with shipping bills, or the bills of export, for goods
  3. 03Foreign inward remittance certificates or bank realisation certificates for export of services
  4. 04Letter of Undertaking in Form RFD-11, where exports are made without paying IGST
  5. 05Statement of invoices in the format prescribed for the refund category
  6. 06Working of the refund amount, including the formula for an inverted duty structure claim
  7. 07Declaration or certificate confirming that the incidence of tax has not been passed on, where required
  8. 08Bank account details validated on the portal, in the name of the registered person
  9. 09Endorsement from the specified officer for supplies to a special economic zone

Due dates and penalties

ItemDue dateIf missed
Refund application in Form RFD-01Within two years from the relevant date for the refund categoryThe claim is time-barred and cannot be made
Letter of Undertaking in Form RFD-11Furnished for each financial year, before exporting without payment of IGSTIGST must be paid on exports and recovered later as a refund
Reply to a deficiency memo or show-cause noticeWithin the time stated in the memo or noticeThe application can be rejected
Interest on a delayed refundPayable where the refund is not issued within 60 days of a complete applicationInterest accrues in the taxpayer's favour, at the rate the Act prescribes

The two-year limit runs from the relevant date, which is defined separately for each refund category: for export of goods it is tied to the date of shipment, for export of services to the date the payment is received, and for other categories to the date of payment of tax or the date of the order. Confirm the relevant date for your claim before filing, as the limit cannot be extended.

Mistakes to avoid

  • Missing the two-year limit because the relevant date was taken as the invoice date rather than the date the category prescribes.
  • Exporting without paying IGST before the Letter of Undertaking has actually been furnished for that financial year.
  • Shipping bill and invoice details that do not match the GST return, so the data never transmits or reconciles.
  • Claiming refund of credit on input services in an inverted duty structure claim, which the prescribed formula does not allow.
  • Filing a fresh application after a deficiency memo without curing the defect that caused it.
  • A bank account that is not validated on the portal or is not in the registered person's name, which holds up the payment.
  • Claiming a refund of credit that was never reflected in the returns for the period concerned.

Why PHMG

  • Partner-led: a chartered accountant reviews your work, not only a junior team.
  • Clear fee and scope in writing before we start.
  • Deadlines tracked for you, with reminders well before the due date.
  • Your documents and data are handled confidentially.
  • Online service across India, with a single point of contact.

Fees depend on your case. Request a quote for a clear scope and fee.

How we handle your gst refund & lut

Step 01

Eligibility and category

We establish which refund category applies and what the relevant date is, since the time limit runs from it.

1–2 days

Step 02

Reconciliation

We reconcile returns, invoices, shipping bills and credit, and compute the claim on the prescribed basis.

3–5 days

Step 03

LUT, where needed

We furnish the Letter of Undertaking in Form RFD-11 so future exports can be made without paying IGST.

1–2 days

Step 04

Filing RFD-01

We file the application with the statements and documents the category requires and the undertakings prescribed.

1 day

Step 05

Acknowledgement or deficiency memo

The officer issues an acknowledgement, or a deficiency memo that requires a fresh application.

Within the period prescribed

Step 06

Order and credit

We follow up to the refund sanction order and the payment advice, and reply to any notice before it.

Until the refund is received

Frequently asked questions

Quick answers to the questions we hear most often.

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Ask a CA
How long does a GST refund take?

Where the application is complete, an acknowledgement is issued within the period the rules prescribe, and for zero-rated supplies a provisional refund of the major part of the claim can be granted shortly after that, with the balance following the officer's scrutiny. In practice the time depends on whether a deficiency memo is issued, because a memo requires a fresh application rather than a correction. If the refund is not paid within 60 days of a complete application, interest becomes payable to the taxpayer.

What is the time limit for claiming a GST refund?

Two years from the relevant date. The relevant date is defined separately for each category of refund: for export of goods it is linked to the date of shipment or despatch, for export of services to the date the convertible foreign exchange is received, and for tax paid in error to the date of payment. Because the limit is not extendable, establishing the relevant date correctly is the first step in any claim.

What is a LUT and who needs one?

A Letter of Undertaking, furnished in Form RFD-11, is an undertaking that lets an exporter make zero-rated supplies without paying IGST on them. Without it, the exporter must pay IGST on the export and then claim it back, which locks up working capital. The LUT is furnished on the portal for each financial year, and it must be in place before the exports are made, not afterwards.

What is the difference between exporting with IGST and under a LUT?

If you export on payment of IGST, you pay the tax and then claim a refund of the IGST paid, which for goods is generally processed on the strength of the shipping bill. If you export under a LUT, you pay no IGST and instead claim a refund of the input tax credit that accumulates because your outward supplies are zero-rated. The first route refunds tax you paid; the second refunds credit you could not use.

What is an inverted duty structure refund?

It arises where the rate of tax on your inputs is higher than the rate on the supply you make, so credit accumulates and can never be used against output tax. The Act allows a refund of that accumulated credit, computed using a formula in the rules. The formula is based on credit on inputs, so credit relating to input services and capital goods does not enter the refundable amount, which is a common point of dispute.

What is a deficiency memo?

A deficiency memo, issued in Form RFD-03, is the officer's notice that the refund application is incomplete or defective. It is not a rejection on merits, but it does mean the application is treated as not having been made: the defect has to be cured and a fresh application filed. Because the two-year limit keeps running, a memo received close to the limit needs immediate attention.

Why are GST refund claims commonly rejected?

The frequent reasons are a mismatch between invoices, shipping bills and the returns; claiming credit that does not appear in the returns for the period; using the wrong refund category or relevant date; computing an inverted duty claim without following the prescribed formula; the absence of proof that foreign exchange was received for an export of services; and an unvalidated bank account. Most of these are reconciliation issues rather than questions of entitlement.

Can a refund be claimed of the balance in the electronic cash ledger?

Yes. Money deposited in the electronic cash ledger that is not needed to pay a liability can be claimed back, and this category is more straightforward than the others because it does not depend on exports or credit accumulation. The claim is made in the same Form RFD-01, selecting the excess balance category.

Last reviewed: October 2026

This content is for general information and does not constitute professional advice. Laws, rates and due dates change; please confirm the current position for your case before acting.

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